Genomic data from the Chinese Rhesus macaque (Macaca mulatta lasiota).
Dataset type: Genomic
Data released on July 06, 2011
Yan G; Zhang G; Fang X; Zhang Y; Li C; Ling F; Cooper DN; Li Q; Li Y; van Gool AJ; Du H; Chen J; Chen R; Zhang P; Huang Z; Thompson JR; Meng Y; Bai Y; Wang J; Zhuo M; Wang T; Huang Y; Wei L; Li J; Wang Z; Hu H; Le L; Stenson PD; Li B; Liu X; Ball EV; An N; Huang Q; Zhang Y; Fan W; Zhang X; Li Y; Wang W; Katze MG; Su B; Nielsen R; Yang H; Wang J; Wang X; Wang J (2011): Genomic data from the Chinese Rhesus macaque (Macaca mulatta lasiota). GigaScience. https://doi.org/10.5524/100002
The Chinese rhesus macaque (Macaca mulatta lasiota) is a subspecies of rhesus macaques that mainly resides in western and central China. Due to their anatomical and physiological similarity with human beings, macaques are a common laboratory model. Also, as several macaques species have been sequenced, such as the Indian rhesus macaque and the crab-eating macaque, examination of the Chinese rhesus macaque (CR) genome offers interesting insights into the entire Macaca genus. The DNA sample for data sequencing and analyses was obtained from a five-year old female CR from southwestern China. The genome was sequenced on the IlluminaGAIIx platform, from which 142-Gb of high-quality sequence, representing 47-fold genome coverage for CR. The total size of the assembled CR genome was about 2.84 Gb, providing 47-fold on average. Scaffolds were assigned to the chromosomes according to the synteny displayed with the Indian rhesus macaque and human genome sequences. About 97% of the CR scaffolds could be placed onto chromosomes.
Additional details
Read the peer-reviewed publication(s):
- Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., Cooper, D. N., Li, Q., Li, Y., van Gool, A. J., Du, H., Chen, J., Chen, R., Zhang, P., Huang, Z., Thompson, J. R., Meng, Y., Bai, Y., Wang, J., … Wang, J. (2011). Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nature Biotechnology, 29(11), 1019–1023. https://doi.org/10.1038/nbt.1992 (PubMed:22002653)
Genome browser:
http://macaque.genomics.org.cn/
Accessions (data included in GigaDB):
GENBANK: AEHK00000000
BioProject: PRJNA51409
Accessions (data not in GigaDB):
SRA: SRP003590
Projects:
Click on a table column to sort the results.
Table SettingsSample ID | Common Name | Scientific Name | Sample Attributes | Taxonomic ID | Genbank Name |
---|---|---|---|---|---|
CR | Rhesus macaque | Macaca mulatta | 9544 | Rhesus monkey |
Click on a table column to sort the results.
Table SettingsFile Name | Description | Sample ID | Data Type | File Format | Size | Release Date | File Attributes | Download |
---|---|---|---|---|---|---|---|---|
Readme | TEXT | 649 B | 2012-04-27 | MD5 checksum: 0fa9b97002ef60849955b4d68e068fe2 |
||||
Sequence assembly | FASTA | 814.30 MB | 2011-07-06 | MD5 checksum: 0f36cdc47e8959d0998a3cfd7f6e65ed |
||||
Coding sequence | FASTA | 10.57 MB | 2011-07-06 | MD5 checksum: 4c7f5b5676d7db69bc8581cce9face1d |
||||
Protein sequence | FASTA | 6.95 MB | 2011-07-06 | MD5 checksum: 421804ecfd171e17c4de2d25853b1735 |
||||
Annotation | GFF | 2.33 MB | 2011-07-06 | MD5 checksum: 7e44c4e01ec74a89202c505eb731ded8 |
||||
Annotation | IPR | 189.04 kB | 2011-07-06 | MD5 checksum: 84eb68fecad964b31128d3a27ee77729 |
||||
Annotation | KEGG | 39.54 kB | 2011-07-06 | MD5 checksum: 1a666f2b9937c37479845bb6ae516eac |
||||
Annotation | WEGO | 428.77 kB | 2011-07-06 | MD5 checksum: 5adddd91a790fb210a45b904907007da |
||||
Annotation | UNKNOWN | 329.18 kB | 2011-07-06 | MD5 checksum: bf4407bc1f1f5b3bb309a17fccb4536f |
||||
Other | TSV | 219.73 MB | 2011-07-06 | MD5 checksum: e6de7dd9d9b30bd856b672f7ba84792c |
Date | Action |
---|