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Genome data from the leaf-cutting ant (Acromyrmex echinatior).

Dataset type: Genomic
Data released on November 12, 2011

Nygaard S; Zhang G; Schiøtt M; Li C; Wurm Y; Hu H; Zhou J; Ji L; Qiu F; Rasmussen M; Pan H; Hauser F; Krogh A; Grimmelikhuijzen CJP; Wang J; Boomsma JJ (2011): Genome data from the leaf-cutting ant (Acromyrmex echinatior). GigaScience. https://doi.org/10.5524/100011

DOI10.5524/100011

Here is presented high-quality (>100x depth) Illumina genome sequence of the leaf-cutting ant Acromyrmex echinatior, a model species for symbiosis and reproductive conflict studies. They make a particularly good model as after humans, leaf-cutting ants form the largest and most complex animal societies on Earth. Part of the subfamily Myrmicinae, this particular species is found in the wild from Mexico to Panama and subsists mostly on a particular fungus of the genus Leucocoprinus, which it cultivates on a medium of masticated leaf tissue. With an estimated total size of 313 Mb, the genome is 28% made up of repeat sequences and has a GC content of 34%.

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Additional details

Read the peer-reviewed publication(s):

  • Nygaard, S., Zhang, G., Schiøtt, M., Li, C., Wurm, Y., Hu, H., Zhou, J., Ji, L., Qiu, F., Rasmussen, M., Pan, H., Hauser, F., Krogh, A., Grimmelikhuijzen, C. J. P., Wang, J., & Boomsma, J. J. (2011). The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming. Genome Research, 21(8), 1339–1348. https://doi.org/10.1101/gr.121392.111 (PubMed:21719571)
Related datasets:

doi:10.5524/100011 IsCitedBy doi:10.5524/100211

Accessions (data not in GigaDB):

ENA: ERP000666

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Table Settings
Sample ID Common Name Scientific Name Sample Attributes Taxonomic ID Genbank Name
ERS032727 Leafcutter ant Acromyrmex echinatior Description:Genome DNA sample for 500bp and 800bp ...
Geographic location (country and/or sea,region):Pa...
Sex:male [PATO:0000384]
...
103372 Panamanian leafcutter ant

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Table Settings

File Name Description Sample ID Data Type File Format Size Release Date File Attributes Download
Readme TEXT 369 B 2011-11-12 MD5 checksum: aac50066a31394b35a95fc67c63e46e6
Sequence assembly FASTA 93.95 MB 2011-11-12 MD5 checksum: 9266ec62be6e42a0ba7c99fdc15406eb
Annotation GFF 6.37 MB 2011-11-12 MD5 checksum: 1ff101b69f75856d8976697cdc30c310
Coding sequence FASTA 22.37 MB 2011-11-12 MD5 checksum: cfdccc3e4db1af4fc17bb5980b79cd51
Protein sequence FASTA 8.56 MB 2011-11-12 MD5 checksum: 6cb6d24e93b07a66c879f73ce5d6f5cc
Date Action
August 3, 2016 Relationship added : DOI 100211