Genome sequence of YH: the first diploid genome sequence of a Han Chinese individual.
Dataset type: Genomic
Data released on July 06, 2011
Wang J; Wang W; Li R; Li Y; Tian G; Goodman L; Fan W; Zhang J; Li J; Zhang J; Guo Y; Feng B; Li H; Lu Y; Fang X; Liang H; Du Z; Li D; Zhao Y; Hu Y; Yang Z; Zheng H; Hellmann I; Inouye M; Pool J; Yi X; Zhao J; Duan J; Zhou Y; Qin J; Ma L; Li G; Yang Z; Zhang G; Yang B; Yu C; Liang F; Li W; Li S; Li D; Ni P; Ruan J; Li Q; Zhu H; Liu D; Lu Z; Li N; Guo G; Zhang J; Ye J; Fang L; Hao Q; Chen Q; Liang Y; Su Y; Asan ; Ping C; Yang S; Chen F; Li L; Zhou K; Zheng H; Ren Y; Yang L; Gao Y; Yang G; Li Z; Feng X; Kristiansen K; Wong GK; Nielsen R; Durbin R; Bolund L; Zhang X; Li S; Yang H; Wang J (2011): Genome sequence of YH: the first diploid genome sequence of a Han Chinese individual. GigaScience. https://doi.org/10.5524/100015
Genomic data from the YH (Homo sapiens) genome – first diploid genome sequence of a Han Chinese, a representative of the Asian population. The genomic DNA used in this study came from an anonymous male Han Chinese individual who has no known genetic diseases. The YH genome was assembled based on 3.3 billion reads using the Illumina Genome Analyzer. We achieved 117.7G nucleotides data and the genome was sequenced to 36-fold average coverage. By aligning the short reads with SOAP, 102.9G nucleotides were mapped onto the NCBI reference genome and 99.97% of the genome was covered. The raw sequences, alignments, consensus genome, variants and relevant tools are released for public use under a CC0 license.
Additional details
Read the peer-reviewed publication(s):
- Wang, J., Wang, W., Li, R., Li, Y., Tian, G., Goodman, L., Fan, W., Zhang, J., Li, J., Zhang, J., Guo, Y., Feng, B., Li, H., Lu, Y., Fang, X., Liang, H., Du, Z., Li, D., Zhao, Y., … Wang, J. (2008). The diploid genome sequence of an Asian individual. Nature, 456(7218), 60–65. https://doi.org/10.1038/nature07484 (PubMed:18987735)
Related datasets:
doi:10.5524/100015 IsSupplementedBy doi:10.5524/100014
doi:10.5524/100015 IsSupplementedBy doi:10.5524/100013
doi:10.5524/100015 IsPreviousVersionOf doi:10.5524/100038(It is a more recent version of this dataset)
Additional information:
Genome browser:
http://yh.genomics.org.cn/mapview.jsp?
Accessions (data included in GigaDB):
ENA: ERP000053
BioProject: PRJEA39173
Projects:
Click on a table column to sort the results.
Table SettingsSample ID | Common Name | Scientific Name | Sample Attributes | Taxonomic ID | Genbank Name |
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YH | Human | Homo sapiens | 9606 | human |
Click on a table column to sort the results.
Table SettingsFile Name | Description | Sample ID | Data Type | File Format | Size | Release Date | File Attributes | Download |
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Sequence assembly | FASTA | 714.29 MB | 2011-07-06 | MD5 checksum: 6df82e9acf4473c09181adb475e6899d |
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Sequence assembly | FASTA | 737.12 MB | 2011-07-06 | MD5 checksum: 4c1b3c01a3f4b813b671cb2eeffca4bf |
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SNPs | UNKNOWN | 278.38 kB | 2011-07-06 | MD5 checksum: 873c1850e862f9f09d1acf1a90cfbb7b |
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SNPs | UNKNOWN | 265.93 kB | 2011-07-06 | MD5 checksum: b4175c99a71a579e9536caddf0789375 |
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SNPs | UNKNOWN | 224.77 kB | 2011-07-06 | MD5 checksum: 5a73f20d238cc46195e91fad17d4901b |
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SNPs | UNKNOWN | 197.59 kB | 2011-07-06 | MD5 checksum: 3272f2c3b560238001942098b7261d2c |
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SNPs | UNKNOWN | 200.17 kB | 2011-07-06 | MD5 checksum: 8d0d62ab65508830b628c9004938a6fa |
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SNPs | UNKNOWN | 218.70 kB | 2011-07-06 | MD5 checksum: 08b9195125e343d76e474b97ded21c24 |
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SNPs | UNKNOWN | 179.65 kB | 2011-07-06 | MD5 checksum: bdf50969e6a9ae8c97386918dd4785a3 |
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SNPs | UNKNOWN | 173.50 kB | 2011-07-06 | MD5 checksum: 60a0b2bb67ead907553a854daca625ff |
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