Single cell whole-exome sequences of bladder cancer from an individual.

Dataset type: Genomic
Data released on July 09, 2012

Li Y; Xu X; Song L; Hou Y; Li Z; Wu K; Wu H; Liang J; Jian M; Li J; Zhang X; Wang J; Yang H; Wang J (2012): Single cell whole-exome sequences of bladder cancer from an individual. GigaScience. https://doi.org/10.5524/100037

DOI10.5524/100037

This dataset contains single-cell and whole-tissue sequencing and annotation data from a muscle-invasive bladder transitional cell carcinoma from one individual. The data available includes: single-cell whole-exome sequences from 55 individual cells, including 44 from the tumor and 11 from normal adjacent tissue; whole-tissue DNA sequence data from this cancer and the matched normal. Additional data includes alignments, SNP calling, and high confidence somatic mutation calling and their allelic frequencies.

Additional details

Read the peer-reviewed publication(s):

Li, Y., Xu, X., Song, L., Hou, Y., Li, Z., Tsang, S., Li, F., Im, K. M., Wu, K., Wu, H., Ye, X., Li, G., Wang, L., Zhang, B., Liang, J., Xie, W., Wu, R., Jiang, H., Liu, X., … Wang, J. (2012). Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. GigaScience, 1(1). https://doi.org/10.1186/2047-217x-1-12 (PubMed:23587365)

Accessions (data not in GigaDB):

SRA: SRA051489

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Table Settings

Sample ID	Common Name	Scientific Name	Sample Attributes	Taxonomic ID	Genbank Name
BC-6	Human	Homo sapiens	Age:57 Sex:male [PATO:0000384] Disease status:MDR:10066753	9606	human
BC-7	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-8	Human	Homo sapiens	Disease status:MDR:10066753 Sex:male [PATO:0000384] Age:57	9606	human
BC-9	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-11	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-13	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-14	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-15	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-16	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human
BC-18	Human	Homo sapiens	Age:57 Disease status:MDR:10066753 Sex:male [PATO:0000384]	9606	human

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Displaying 10 samples of 57

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Table Settings

File Name	Data Type	File Format	Size	Release Date	File Attributes
chr1.gz	Alignments	UNKNOWN	243.17 MB	2012-07-09	MD5 checksum: f77f57d45255dd465dcba8ce27b2fe44
chr10.gz	Alignments	UNKNOWN	76.40 MB	2012-07-09	MD5 checksum: bc55b607b21803ab8e5aa62a675eb5a1
chr11.gz	Alignments	UNKNOWN	92.52 MB	2012-07-09	MD5 checksum: bb295b3f1382dae2305ea502fc183301
chr12.gz	Alignments	UNKNOWN	90.47 MB	2012-07-09	MD5 checksum: 46759148493640f10d411a9caa3dfb01
chr13.gz	Alignments	UNKNOWN	52.39 MB	2012-07-09	MD5 checksum: 691dcdbaa3ddd719e83f3a738d94a37d
chr14.gz	Alignments	UNKNOWN	55.34 MB	2012-07-09	MD5 checksum: f8edbddf9f72fd256815eccdee5e8fdb
chr15.gz	Alignments	UNKNOWN	70.10 MB	2012-07-09	MD5 checksum: 3c1e9ee6fef208ce7f6e04ca1669d5bb
chr16.gz	Alignments	UNKNOWN	55.02 MB	2012-07-09	MD5 checksum: 869f25772b8ddc5a97b4e3eb4b6167f9
chr17.gz	Alignments	UNKNOWN	85.20 MB	2012-07-09	MD5 checksum: 899e33e65353db3c2d36bccba4c8404d
chr18.gz	Alignments	UNKNOWN	36.90 MB	2012-07-09	MD5 checksum: cc4f1366296e80428e8298a0e8e4013f

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Displaying 10 files of 4199

Date	Action