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Example files and supporting material for "EMPeror: An interactive analysis and visualization tool for high throughput microbial ecology datasets."

Dataset type: Software
Data released on November 22, 2013

Vázquez-Baeza Y; Pirrung M; Gonzalez A; Knight R (2013): Example files and supporting material for "EMPeror: An interactive analysis and visualization tool for high throughput microbial ecology datasets." GigaScience Database. https://doi.org/10.5524/100068

DOI10.5524/100068

EMPeror is an interactive next generation tool for the analysis, visualization and understanding of high throughput microbial ecology datasets.
Due to it’s tailor-made graphical user interface, delving into a new dataset to elucidate the patterns hidden in the data, has never been easier. EMPeror brings a rich set of customizations and modifications that can be integrated into any QIIME compliant dataset; with lightweight data files and hardware accelerated graphics, constitutes itself as the state of the art for analyzing N-dimensional data using principal coordinates analysis.
The data presented here is the version of the software at point of publication, together with the example results used to illiustrate the functionality in the associated GigaScience paper. In addition, we host the script used to generate the EMPeror input file to create these examples, which some users may find useful to help replicate the example.

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Additional details

Read the peer-reviewed publication(s):

  • Vázquez-Baeza, Y., Pirrung, M., Gonzalez, A., & Knight, R. (2013). EMPeror: a tool for visualizing high-throughput microbial community data. GigaScience, 2(1). https://doi.org/10.1186/2047-217x-2-16

Additional information:

http://qiime.org/emperor/index.html

ftp://thebeast.colorado.edu/pub/emperor_files/

Click on a table column to sort the results.

Table Settings

File Name Description Sample ID Data Type File Format Size Release Date File Attributes Download
Readme TEXT 838 B 2013-11-13 MD5 checksum: 439f51cab8f97747f4c33c7c2f0f309a
Metadata mapping file Tabular data TSV 33.76 MB 2013-11-13 MD5 checksum: 6ed3e383c2bcf2f44e0795b61848fa3d
Principal coordinates file. Tabular data TEXT 583.63 MB 2013-11-13 MD5 checksum: 009c2a6e864180a0fbdd6d70936cfb48
Example EMPeror visualization file. To load directly from GigaDB simply click file name. Enter both username and password as 'gigadb'. This will take alot longer to open than if you download the 'emperor_unweighted_unifrac.zip' file, unzip and open the index.html file on your local machine. HTML UNKNOWN 24.90 MB 2013-11-13 MD5 checksum: 14054547997d3ad550b3cdf910a7713c
This ZIP archive contains all the files required to display the EMPeror visualisation example file. Download, unzip and open the "index.html" file using chrome or another web-browser. Mixed archive zip 2.49 MB 2013-11-13
metadata mapping file Tabular data UNKNOWN 33.76 MB 2013-11-13 MD5 checksum: 44e39e9c17de9104b8a1d07e2991330c
Date Action
November 27, 2015 File emperor_unweighted_unifrac.zip updated