Skip to main content
GigaDB Logo and tagline: Revolutionizing data dissemination, organization and use
NCBI BLAST+ logo

Supporting data and materials for "NCBI BLAST+ integrated into Galaxy".

Dataset type: Software
Data released on August 12, 2015

Cock PJA; Chilton JM; Grüning B; Johnson JE; Soranzo N (2015): Supporting data and materials for "NCBI BLAST+ integrated into Galaxy". GigaScience Database. https://doi.org/10.5524/100149

DOI10.5524/100149

The NCBI BLAST suite has become ubiquitous in modern molecular biology and is used for small tasks such as checking capillary sequencing results of single PCR products, genome annotation or even larger scale pan-genome analyses. For early adopters of the Galaxy web-based biomedical data analysis platform, integrating BLAST into Galaxy was a natural step for sequence comparison workflows. Here we provide the command line NCBI BLAST+ tool suite wrapped for use within Galaxy.
The integration of the BLAST+ tool suite into Galaxy has the goal of making common BLAST tasks easy and advanced tasks possible. This project is an informal international collaborative effort, it is deployed and used on Galaxy servers worldwide.

Keywords:

View citations on Google ScholarView citations on Europe PubMed CentralView citations on Dimensions

Contact Submitter

Additional details

Read the peer-reviewed publication(s):

  • Cock, P. J. A., Chilton, J. M., Grüning, B., Johnson, J. E., & Soranzo, N. (2015). NCBI BLAST+ integrated into Galaxy. GigaScience, 4(1). https://doi.org/10.1186/s13742-015-0080-7

Additional information:

http://www.myexperiment.org/workflows/4584.html

https://registry.hub.docker.com/u/bgruening/galaxy-blast/dockerfile/

https://github.com/peterjc/galaxy_blast

Click on a table column to sort the results.

Table Settings

File Name Description Sample ID Data Type File Format Size Release Date File Attributes Download
Readme TEXT 666 B 2015-05-18 MD5 checksum: 83efee2a348585a8d5b96dea25ca28ea
Galaxy wrappers for NCBI BLAST tools, GitHub repo download copy, taken as archive version to match publication 18-May-2015 GitHub archive zip 807.18 kB 2015-05-18 MD5 checksum: f07ffd26370e892dd2135c76a9992551
A complete and production ready Galaxy instance with BLAST tools installed, archived GitHub copy taken to match publication 18-May-2015 Mixed archive zip 5.83 kB 2015-05-18 MD5 checksum: 53b6096f47814c639e5b4f35771f7c88
the galaxy workflow as published in http://www.myExperiment.org/workflows/4583.html, 18-May2015 Workflow GalaxyWF 20.44 kB 2015-05-18 MD5 checksum: aa386f2e8dc4ce142cb08fcc40ee4e9f
Displaying 4 files of 4
Funding body Awardee Award ID Comments
National Science Foundation 1147079 John M. Chilton and James E. Johnson
Date Action
August 12, 2015 Dataset publish
September 4, 2015 Manuscript Link added : 10.1186/s13742-015-0080-7