biologia plantarum

International journal on Plant Life established by Bohumil Němec in 1959

Biologia plantarum 57:655-662, 2013 | DOI: 10.1007/s10535-013-0334-0

Molecular analysis of the annexin gene family in soybean

Y. M. Feng1, X. K. Wei1, W. X. Liao1, L. H. Huang2, H. Zhang1, S. C. Liang1, H. Peng1,3,*
1 College of Life Sciences, Guangxi Normal University, Guilin, P.R. China
2 Hunan Agricultural Product Processing Institute, Hunan Academy of Agricultural Science, Changsha, P.R. China
3 Food Quality Laboratory, Plant Science Institute, USDA-ARS, Beltsville, USA

Annexins play a crucial role in plant development and response to environmental stimuli. In this study, a total of 23 annexin genes (GmANN1 - GmANN23) were identified from the soybean genome database and for two of them (GmANN11 and GmANN14), complete cDNAs were cloned. GmANN1 - GmANN23 encoded a set of predicted proteins which showed high similarity to other known annexins. Most GmANN genes contained four putative annexin repeats. Generally, a type II Ca2+-binding site is found to exist in the first and fourth repeats. GmANN1, 10, 11, 12, and 14 showed different organ-specific expression patterns. Furthermore, expression of these five GmANNs was significantly induced by drought and abscisic acid. Expression of four annexins (GmANN1, 11, 12, and 14) was induced by cold and expression of three annexins (GmANN1, 11, and 12) responded to high salinity.

Keywords: abscisic acid; cold; drought; gene expression; Glycine max; salinity
Subjects: annexin gene family; gene expression; abscisic acid; temperature - low; water stress; salinity; phylogenetic tree; soybean

Received: November 3, 2012; Accepted: February 13, 2013; Published: December 1, 2013  Show citation

ACS AIP APA ASA Harvard Chicago IEEE ISO690 MLA NLM Turabian Vancouver
Feng, Y.M., Wei, X.K., Liao, W.X., Huang, L.H., Zhang, H., Liang, S.C., & Peng, H. (2013). Molecular analysis of the annexin gene family in soybean. Biologia plantarum57(4), 655-662. doi: 10.1007/s10535-013-0334-0
Download citation

References

  1. Andrawis, A., Solomon, M., Delmer, D.P.: Cotton fibre annexins: a potential role in the regulation of callose synthase. - Plant J. 3: 763-772, 1993. Go to original source...
  2. Cantero, A., Barthakur, S., Bushart, T.J., Chou, S., Morgan, R.O., Fernandez, M.P., Clark, G.B., Roux, S.J.: Expression profiling of the Arabidopsis annexin gene family during germination, de-etiolation and abiotic stress. - Plant Physiol. Biochem. 44: 13-24, 2006. Go to original source...
  3. Clark, G.B., Sessions, A., Eastburn, D.J., Roux, S.J.: Differential expression of members of the annexin multigene family in Arabidopsis. - Plant Physiol. 126: 1072-1084, 2001. Go to original source...
  4. Chang, W.C., Lee, T.Y., Huang, H.D., Huang, H.Y., Pan, R.L.: PlantPAN: plant promoter analysis navigator for identifying combinatorial cis-regulatory elements with distance constraint in plant gene group. - BMC Genomics 9: 561, 2008. Go to original source...
  5. Danna, K.J., Workman, R., Coryell, V., Keim, P.: 5S rRNA genes in tribe Phaseoleae: array size, number, and dynamics. - Genome 39: 445-455, 1996. Go to original source...
  6. Deutsch, M., Long, M.: Intron-exon structures of eukaryotic model organisms. - Nucl. Acids Res. 27: 3219-3228, 1999. Go to original source...
  7. Diaz-de-Leon, F., Klotz, K.L., Lagrimini, M.: Nucleotide sequence of the tobacco (Nicotiana tabacum) anionic peroxidase gene. - Plant Physiol. 101: 1117-1118, 1993. Go to original source...
  8. Divya, K., Jami, S.K., Kirti, P.B.: Constitutive expression of mustard annexin, AnnBj1 enhances abiotic stress tolerance and fiber quality in cotton under stress. - Plant mol. Boil. 73: 293-308, 2010. Go to original source...
  9. Dvořáková, L., Cvrčková, F., Fischer, L.: Analysis of the hybrid proline-rich protein families from seven plant species suggests rapid diversification of their sequences and expression patterns. - BMC Genomics 8: 412, 2007. Go to original source...
  10. Gerke, V., Creutz, C.E., Moss, S.E.: Annexins: linking Ca2+ signalling to membrane dynamics. - Nat. Rev. mol. cell. Biol. 6: 449-461, 2005. Go to original source...
  11. Gorecka, K.M., Konopka-Postupolska, D., Hennig, J., Buchet, R., Pikula, S.: Peroxidase activity of annexin 1 from Arabidopsis thaliana. - Biochem. biophys. Res. Commun. 336: 868-875, 2005. Go to original source...
  12. Hayes, M.J., Rescher, U., Gerke, V., Moss, S.E.: Annexin-actin interactions. - Traffic 5: 571-576, 2004. Go to original source...
  13. Hofmann, A., Proust, J., Dorowski, A., Schantz, R., Huber, R.: Annexin 24 from Capsicum annuum. X-ray structure and biochemical characterization. - J. biol. Chem. 275: 8072-8082, 2000. Go to original source...
  14. Hong, X., Scofield, D.G., Lynch, M.: Intron size, abundance, and distribution within untranslated regions of genes. - Mol. Biol. Evol. 23: 2392-404, 2006. Go to original source...
  15. Huh, S.M., Noh, E.K., Kim, H.G., Jeon, B.W., Bae, K., Hu, H.C., Kwak, J.M., Park, O.K.: Arabidopsis annexins annAt1 and annAt4 interact with each other and regulate drought and salt stress responses. - Plant Cell Physiol. 51: 1499-1514, 2010. Go to original source...
  16. Jami, S.K., Clark, G.B., Ayele, B.T., Ashe, P., Kirti, P.B.: Genome-wide comparative analysis of annexin superfamily in plants. - PLoS ONE 7: e47801, 2012a. Go to original source...
  17. Jami, S.K., Clark, G.B., Ayele, B.T., Roux, S.J., Kirti, P.B.: Identification and characterization of annexin gene family in rice. - Plant Cell Rep. 31: 813-825, 2012b. Go to original source...
  18. Jami, S.K., Clark, G.B., Turlapati, S.A., Handley, C., Roux, S.J., Kirti, P.B.: Ectopic expression of an annexin from Brassica juncea confers tolerance to abiotic and biotic stress treatments in transgenic tobacco. - Plant Physiol. Biochem. 46: 1019-1030, 2008. Go to original source...
  19. Jami, S.K., Dalal, A., Divya, K., Kirti, P.B.: Molecular cloning and characterization of five annexin genes from Indian mustard (Brassica juncea L. Czern and Coss). - Plant Physiol. Biochem. 47: 977-990, 2009. Go to original source...
  20. Konopka-Postupolska, D., Clark, G., Goch, G., Debski, J., Floras, K., Cantero, A., Fijolek, B., Roux, S., Hennig, J.: The role of annexin 1 in drought stress in Arabidopsis. - Plant Physiol. 150: 1394-1410, 2009. Go to original source...
  21. Laohavisit, A., Brown, A.T., Cicuta, P., Davies, J.M.: Annexins - components of the calcium and reactive oxygen signaling network. - Plant Physiol. 152: 1824-1829, 2010.
  22. Laohavisit, A., Davies, J.M.: Annexins. - New Phytol. 189: 40-53, 2011. Go to original source...
  23. Laohavisit, A., Shang, Z., Rubio, L., Cuin, T.A., Véry, A., Wang, A., Mortimer, J.C., Macpherson, N., Coxon, K.M., Battey, N.H., Brownlee, C., Park, O.K., Sentenac, H., Shabala, S., Webb, A.A., Davies, J.M.: Arabidopsis annexin1 mediates the radical-activated plasma membrane Ca2+ - and K+ - permeable conductance in root cells. - Plant Cell 24: 1522-1533, 2012. Go to original source...
  24. Lescot, M., Déhais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., Rouzé, P., Rombauts, S.: PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. - Nucl. Acids Res. 30: 1325-327, 2002. Go to original source...
  25. Liemann, S., Benz, J., Burger, A., Voges, D., Hofmann, A., Huber, R., Göttig, P.: Structural and functional characterization of the voltage sensor in the ion channel human annexin. - J. mol. Biol. 258: 555-561, 1996. Go to original source...
  26. Liu, T., Li, Y., Ren, J., Zhang, C., Kong, M., Song, X., Zhou, J., Hou, X.: Over-expression of BcFLC1 from non-heading Chinese cabbage enhances cold tolerance in Arabidopsis. - Biol. Plant. 57: 262-266, 2013. Go to original source...
  27. Lu, Y., Ouyang, B., Zhang, J., Wang, T., Lu, C., Han, Q., Zhao, S., Ye, Z., Li, H.: Genomic organization, phylogenetic comparison and expression profiles of annexin gene family in tomato (Solanum lycopersicum). - Gene 499: 14-24, 2012. Go to original source...
  28. McClung, A.D., Carroll, A.D., Battey, N.H.: Identification and characterization of ATPase activity associated with maize (Zea mays) annexins. - Biochem. J. 30: 709-712, 1994. Go to original source...
  29. Moss, S.E., Morgan, R.O.: The annexins. - Genome Biol. 5: 219, 2004. Go to original source...
  30. Pfaffl, M.W., Horgan, G.W., Demple, L.: Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. - Nucl. Acids Res. 30: e36, 2002. Go to original source...
  31. Park, H.C., Kim, M.L., Kang, Y.H., Jeon, J.M., Yoo, J.H., Kim, M.C.: Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. - Plant Physiol. 135: 2150-2161, 2004. Go to original source...
  32. Ren, X.Y., Vorst, O., Fiers, M., Stiekema, W.J., Nap, J.P.: In plants, highly expressed genes are the least compact. - Trends Genet. 22: 528-532, 2006. Go to original source...
  33. Saitou, N., Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. - Mol. Biol. Evol. 13: 964-969, 1987.
  34. Seals, D.F., Randall, S.K.: A vacuole-associated annexin protein, VCaB42, correlates with the expansion of tobacco cells. - Plant Physiol. 115: 753-761, 1997. Go to original source...
  35. Swinburne I.A., Miguez, D.G., Landgraf, D., Silver, P.A.: Intron length increases oscillatory periods of gene expression in animal cells. - Gene Dev. 22: 2342-2346, 2008. Go to original source...
  36. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G.: The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. - Nucl. Acids Res. 25: 4876-4882, 1997. Go to original source...
  37. Yamaguchi-Shinozaki, K., Shinozaki, K.: Arabidopsis DNA encoding two desiccation-responsive rd29 genes. - Plant Physiol. 101: 1119-1120, 1993. Go to original source...
  38. Zhang, Y., Wang, Q., Zhang, X., Liu, X., Wang, P., Hou, Y.: Cloning and characterization of an annexin gene from Cynanchum komarovii that enhances tolerance to drought and Fusarium oxysporum in transgenic cotton. - J. Plant Biol. 54: 303-313, 2011. Go to original source...