1887

Abstract

(CYMV), a member of the family , genus , causes citrus mosaic disease, a disease that occurs commonly in India. The CYMV genome has been cloned and its complete nucleotide sequence determined. Its DNA genome is 7559 bp in length and contains six putative open reading frames (ORFs), all on the plus-strand of the genome and each capable of encoding proteins with a molecular mass of greater than 10 kDa. ORF 3, the largest ORF, encodes a putative polyprotein for functions involved in virus movement, assembly and replication. The other ORFs encode proteins whose exact functions are not completely understood. The genome also contains a plant tRNA-binding site, which may serve as a primer for minus-strand DNA synthesis, in its intergenic region. Phylogenetic analysis of the badnaviruses revealed that CYMV is most closely related to . It was demonstrated that a construct containing 1·4 copies of the cloned CYMV genome could infect sweet orange via -mediated inoculation.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/0022-1317-82-10-2549
2001-10-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/jgv/82/10/0822549a.html?itemId=/content/journal/jgv/10.1099/0022-1317-82-10-2549&mimeType=html&fmt=ahah

References

  1. Ahlawat Y. S., Chenulu V. V., Vishwanath S. M., Pandey P. K. 1984; Studies on a mosaic disease of citrus in India. Current Science 54:873–874
    [Google Scholar]
  2. Ahlawat Y. S., Pant R. P., Lockhart B. E., Srivastava M., Chakraborty N. K., Varma A. 1996a; Association of a badnavirus with citrus mosaic disease in India. Plant Disease 80:590–592
    [Google Scholar]
  3. Ahlawat Y. S., Varma A., Pant R. P., Shukla A., Lockhart B. E. L. 1996b; Partial characterization of a badnavirus associated with citrus yellow mosaic disease in India. 13th Conference of the International Organization of Citrus Virologists pp 208–217 California: University of California Press;
    [Google Scholar]
  4. Altschul S. F., Madden T. L., Schaffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25:3389–3402
    [Google Scholar]
  5. An G., Ebert P. R., Mitra A., Ha S. B. 1988; Binary vectors. In Plant Molecular Biology Manual pp 1–19 Edited by Gelvin S. B., Schilperoort R. A. Dordrecht: Kluwer;
    [Google Scholar]
  6. Berg J. M. 1990; Zinc fingers and other metal-binding domains. Elements for interactions between macromolecules. Journal of Biological Chemistry 265:6513–6516
    [Google Scholar]
  7. Boeke J. D., Corces V. G. 1989; Transcription and reverse transcription of retrotransposons. Annual Review of Microbiology 43:403–434
    [Google Scholar]
  8. Bouhida M., Lockhart B. E. L., Olszewski N. E. 1993; An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice. Journal of General Virology 74:15–22
    [Google Scholar]
  9. Briddon R. B., Phillips S., Brunt A., Hull R. 1999; Analysis of the sequence of dioscorea Alata bacilliform virus: comparison to other members of the badnavirus group. Virus Genes 18:277–283
    [Google Scholar]
  10. Calvert L. A., Ospina M. D., Shepherd R. J. 1995; Characterization of cassava vein mosaic virus: a distinct plant pararetrovirus. Journal of General Virology 76:1271–1276
    [Google Scholar]
  11. Cheng C., Lockhart B. E. L., Olszewski N. E. 1996; The ORF I and II proteins of Commelina yellow mottle virus are virion-associated. Virology 223:263–271
    [Google Scholar]
  12. Dakshinamurti V., Reddy G. S. 1975; Mosaic: a transmissible disorder of sweet oranges. Indian Phytopathology 28:398–399
    [Google Scholar]
  13. Dasgupta I., Hull R., Eastop S., Poggi-Pollini C., Blakebrough M., Boulton M. I., Davis J. W. 1991; Rice tungro bacilliform virus DNA independently infects rice after Agrobacterium -mediated transfer. Journal of Virology 72:1215–1221
    [Google Scholar]
  14. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12:387–395
    [Google Scholar]
  15. Dixon L. K., Hohn T. 1984; Initiation of translation of the cauliflower mosaic virus genome from a polycistronic mRNA: evidence from deletion mutagenesis. EMBO Journal 3:2731–2736
    [Google Scholar]
  16. Felsenstein J. 1989; PHYLIP: Phylogeny Inference Package, version 3.2. Cladistics 5:164–166
    [Google Scholar]
  17. Franck A., Guilley H., Jonard G., Richards K., Hirth L. 1980; Nucleotide sequence of cauliflower mosaic virus DNA. Cell 21:285–294
    [Google Scholar]
  18. Futterer J., Potrykus I., Valles Brau M. P., Dasgupta I., Hull R., Hohn T. 1994; Splicing in a plant pararetrovirus. Virology 198:663–670
    [Google Scholar]
  19. Futterer J., Rothnie H. M., Hohn T., Potrykus I. 1997; Rice tungro bacilliform virus open reading frames II and III are translated from polycistronic pregenomic RNA by leaky scanning. Journal of Virology 71:7984–7989
    [Google Scholar]
  20. Geering A. D. W., McMichael L. A., Dietzgen R. G., Thomas J. E. 2000; Genetic diversity among banana streak virus isolates from Australia. Phytopathology 90:921–927
    [Google Scholar]
  21. Gowda S., Wu F. C., Scholthof H. B., Shepherd R. J. 1989; Gene IV of figwort mosaic virus (caulimovirus group) functions in posttranscriptional expression of genes on the full-length RNA transcript. Proceedings of the National Academy of Sciences, USA 86:9203–9207
    [Google Scholar]
  22. Grimsley N., Bisaro D. 1987; Agroinfection. In Plant DNA Infectious Agents pp 87–107 Edited by Hohn T., Schell J. New York: Springer–Verlag;
    [Google Scholar]
  23. Grimsley N., Hohn B., Hohn T., Walden R. 1986; Agroinfection; an alternative route for viral infection of plants by using the Ti plasmid. Proceedings of the National Academy of Sciences, USA 83:3282–3286
    [Google Scholar]
  24. Grimsley N., Hohn T., Davies J. W., Hohn B. 1987; Agrobacterium -mediated delivery of infectious maize streak virus into maize plants. Nature 325:177–179
    [Google Scholar]
  25. Hagen L. S., Jacquemond M., Lepingle A., Lot H., Tepfer M. 1993; Nucleotide sequence and genomic organization of cacao swollen shoot virus. Virology 196:619–628
    [Google Scholar]
  26. Harper G., Hull R. 1998; Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17:271–278
    [Google Scholar]
  27. Hasegawa A., Verver J., Shimada A., Saito M., Goldbach R., Van Kammen A., Miki K., Kameya-Iwaki M., Hibi T. 1989; The complete sequence of soybean chlorotic mottle virus DNA and the identification of a novel promoter. Nucleic Acids Research 17:9993–10013
    [Google Scholar]
  28. Hay J. M., Jones M. C., Blakebrough M. L., Dasgupta I., Davies J. W., Hull R. 1991; An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus. Nucleic Acids Research 19:2615–2621
    [Google Scholar]
  29. Hearne P. Q., Knorr D. A., Hillman B. I., Morris T. J. 1990; The complete genome structure and synthesis of infectious RNA from clones of tomato bushy stunt virus. Virology 177:141–151
    [Google Scholar]
  30. Hibino H. 1983; Relations of rice tungro bacilliform and rice tungro spherical viruses with their vector Nephotettix virrescens. Annals of the Phytopathological Society of Japan 49545–553
    [Google Scholar]
  31. Hohn T., Futterer J. 1991; Pararetroviruses and retroviruses: a comparison of expression strategies. Seminars in Virology 2:55–69
    [Google Scholar]
  32. Hohn T., Futterer J. 1997; The proteins and functions of plant pararetroviruses: knowns and unknowns. Critical Reviews in Plant Sciences 16:133–161
    [Google Scholar]
  33. Hohn T., Hohn B., Pfeiffer P. 1985; Reverse transcription in CaMV. Trends in Biochemical Sciences 10:205–209
    [Google Scholar]
  34. Howell S., Hull R. 1978; Replication of cauliflower mosaic virus and transcription of its genome in turnip leaf protoplasts. Virology 86:468–481
    [Google Scholar]
  35. Hull R. 1996; Molecular biology of rice tungro viruses. Annual Review of Phytopathology 34:275–297
    [Google Scholar]
  36. Hull R., Covey S. N. 1983; Does cauliflower mosaic virus replicate by reverse transcription?. Trends in Biochemical Sciences 8:119–121
    [Google Scholar]
  37. Jacquot E., Hagen L. S., Jacquemond M., Yot P. 1996; The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein. Virology 225:191–195
    [Google Scholar]
  38. Jacquot E., Hagen L. S., Michler P., Rohfritsch O., Stussi-Garaud C., Keller M., Jacquemond M., Yot P. 1999; In situ localization of cacao swollen shoot virus in agroinfected Theobroma cacao. Archives of. Virology 144:259–271
    [Google Scholar]
  39. Joshi C. P. 1987; Putative polyadenylation signals in nuclear genes of higher plants: a compilation and analysis. Nucleic Acids Research 15:9627–9640
    [Google Scholar]
  40. Kano H., Koizumi M., Noda H., Hibino H., Ishikawa K., Omura T., Cabanatan P. Q., Koganezawa H. 1992; Nucleotide sequence of capsid protein gene of rice tungro bacilliform virus. Archives of Virology 124:157–163
    [Google Scholar]
  41. Laco G. S., Beachy R. N. 1994; Rice tungro bacilliform virus encodes reverse transcriptase, DNA polymerase, and ribonuclease H activities. Proceedings of the National Academy of Sciences, USA 91:2654–2658
    [Google Scholar]
  42. Leclerc D., Burri L., Kajava A. V., Mougeot J. L., Hess D., Lustig A., Kleemann G., Hohn T. 1998; The open reading frame III product of cauliflower mosaic virus forms a tetramer through a N-terminal coiled-coil. Journal of Biological Chemistry 273:29015–29021
    [Google Scholar]
  43. Lockhart B. E. L., Olszewski N. E. 1999; Badnaviruses. In Encyclopedia of Virology pp 1296–1300 Edited by Granoff A., Webster R. G. San Diego: Academic Press;
    [Google Scholar]
  44. Lockhart B. E. L., Autrey L. J. C., Comstock J. C. 1992; Partial purification and serology of sugarcane mild mosaic virus, a mealybug-transmitted clostero-like virus. Phytopathology 82:691–695
    [Google Scholar]
  45. Medberry S. L., Lockhart B. E. L., Olszewski N. E. 1990; Properties of Commelina yellow mottle virus’s complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Nucleic Acids Research 18:5505–5513
    [Google Scholar]
  46. Odell J. T., Nagy F., Chua N.-H. 1985; Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature 313:810–812
    [Google Scholar]
  47. Pearson W. R., Lipman D. J. 1988; Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences, USA 85:2444–2448
    [Google Scholar]
  48. Pfeiffer P., Hohn T. 1983; Involvement of reverse transcription in the replication of cauliflower mosaic virus: a detailed model and test of some aspects. Cell 33:781–789
    [Google Scholar]
  49. Pringle C. R. 1998; The universal system of virus taxonomy of the International Committee on Virus Taxonomy (ICTV), including new proposals ratified since publication of the Sixth ICTV Report in 1995. Archives of Virology 143:203–210
    [Google Scholar]
  50. Qu R., Bhattacharyya M., Laco G. S., Kochko A., Rao B. L. S., Kaniewska M. B., Elmer J. S., Rochester D. E., Smith C. E., Beachy R. N. 1991; Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses. Virology 185:354–364
    [Google Scholar]
  51. Richert-Poggeler K. R., Shepherd R. J. 1997; Petunia vein-clearing virus: a plant pararetrovirus with the core sequences for an integrase function. Virology 236:137–146
    [Google Scholar]
  52. Rothnie H. M., Chapdelaine Y., Hohn T. 1994; Pararetroviruses and retroviruses: a comparative review of viral structure and gene expression strategies. Advances in Virus Research 44:1–67
    [Google Scholar]
  53. Thompson J. D., Higgins D. G., Gibson T. J. 1994; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/0022-1317-82-10-2549
Loading
/content/journal/jgv/10.1099/0022-1317-82-10-2549
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error