1887

Abstract

Little is known about viruses associated with Antarctic animals, although they are probably widespread. We recovered a novel polyomavirus from Adélie penguin () faecal matter sampled in a subcolony at Cape Royds, Ross Island, Antarctica. The 4988 nt Adélie penguin polyomavirus (AdPyV) has a typical polyomavirus genome organization with three ORFs that encoded capsid proteins on the one strand and two non-structural protein-coding ORFs on the complementary strand. The genome of AdPyV shared ~60 % pairwise identity with all avipolyomaviruses. Maximum-likelihood phylogenetic analysis of the large T-antigen (T-Ag) amino acid sequences showed that the T-Ag of AdPyV clustered with those of avipolyomaviruses, sharing between 48 and 52 % identities. Only three viruses associated with Adélie penguins have been identified at a genomic level, avian influenza virus subtype H11N2 from the Antarctic Peninsula and, respectively, papillomavirus and AdPyV from capes Crozier and Royds on Ross Island.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/vir.0.000038
2015-04-01
2024-04-24
Loading full text...

Full text loading...

/deliver/fulltext/jgv/96/4/851.html?itemId=/content/journal/jgv/10.1099/vir.0.000038&mimeType=html&fmt=ahah

References

  1. Alexander D. J., Manvell R. J., Collins M. S., Brockman S. J., Westbury H. A., Morgan I., Austin F. J. 1989; Characterization of paramyxoviruses isolated from penguins in Antarctica and sub-Antarctica during 1976–1979. Arch Virol 109:135–143 [View Article][PubMed]
    [Google Scholar]
  2. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. 1990; Basic local alignment search tool. J Mol Biol 215:403–410 [View Article][PubMed]
    [Google Scholar]
  3. Austin F. J., Webster R. G. 1993; Evidence of ortho- and paramyxoviruses in fauna from Antarctica. J Wildl Dis 29:568–571 [View Article][PubMed]
    [Google Scholar]
  4. Barbosa A., Palacios M. J. 2009; Health of Antarctic birds: a review of their parasites, pathogens and diseases. Polar Biol 32:1095–1115 [View Article]
    [Google Scholar]
  5. Barbosa A., Colominas-Ciuró R., Coria N., Centurión M., Sandler R., Negri A., Santos M. 2015; First record of feather-loss disorder in Antarctic Penguins. Antarct Sci 27:69–70 [View Article]
    [Google Scholar]
  6. Bennett M. D., Gillett A. 2014; Butcherbird polyomavirus isolated from a grey butcherbird (Cracticus torquatus) in Queensland, Australia. Vet Microbiol 168:302–311 [View Article][PubMed]
    [Google Scholar]
  7. Carulei O., Douglass N., Williamson A. L. 2009; Phylogenetic analysis of three genes of Penguinpox virus corresponding to Vaccinia virus G8R (VLTF-1), A3L (P4b) and H3L reveals that it is most closely related to Turkeypox virus, Ostrichpox virus and Pigeonpox virus. Virol J 6:52 [View Article][PubMed]
    [Google Scholar]
  8. Darriba D., Taboada G. L., Doallo R., Posada D. 2011; ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164–1165 [View Article][PubMed]
    [Google Scholar]
  9. Dugger K. M., Ainley D. G., Lyver P. O., Barton K., Ballard G. 2010; Survival differences and the effect of environmental instability on breeding dispersal in an Adelie penguin meta-population. Proc Natl Acad Sci U S A 107:12375–12380 [View Article][PubMed]
    [Google Scholar]
  10. Dugger K. M., Ballard G., Ainley D. G., Lyver P. O. B., Schine C. 2014; Adélie Penguins coping with environmental change: results from a natural experiment at the edge of their breeding range. Front Ecol Evol 2:68 [View Article]
    [Google Scholar]
  11. Edgar R. C. 2004; muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797 [View Article][PubMed]
    [Google Scholar]
  12. Ehlers B., Moens U. 2014; Genome analysis of non-human primate polyomaviruses. Infect Genet Evol 26:283–294 [View Article][PubMed]
    [Google Scholar]
  13. Gardner H., Kerry K., Riddle M., Brouwer S., Gleeson L. 1997; Poultry virus infection in Antarctic penguins. Nature 387:245 [View Article][PubMed]
    [Google Scholar]
  14. Gerits N., Moens U. 2012; Agnoprotein of mammalian polyomaviruses. Virology 432:316–326 [View Article][PubMed]
    [Google Scholar]
  15. Guerin J. L., Gelfi J., Dubois L., Vuillaume A., Boucraut-Baralon C., Pingret J. L. 2000; A novel polyomavirus (goose hemorrhagic polyomavirus) is the agent of hemorrhagic nephritis enteritis of geese. J Virol 74:4523–4529 [View Article][PubMed]
    [Google Scholar]
  16. Guindon S., Dufayard J. F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 2010; New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321 [View Article][PubMed]
    [Google Scholar]
  17. Halami M. Y., Dorrestein G. M., Couteel P., Heckel G., Müller H., Johne R. 2010; Whole-genome characterization of a novel polyomavirus detected in fatally diseased canary birds. J Gen Virol 91:3016–3022 [View Article][PubMed]
    [Google Scholar]
  18. Hurt A. C., Vijaykrishna D., Butler J., Baas C., Maurer-Stroh S., Silva-de-la-Fuente M. C., Medina-Vogel G., Olsen B., Kelso A.other authors 2014; Detection of evolutionarily distinct avian influenza a viruses in antarctica. MBio 5:e01098–e14 [View Article][PubMed]
    [Google Scholar]
  19. Johne R., Müller H. 2007; Polyomaviruses of birds: etiologic agents of inflammatory diseases in a tumor virus family. J Virol 81:11554–11559 [View Article][PubMed]
    [Google Scholar]
  20. Johne R., Wittig W., Fernández-de-Luco D., Höfle U., Müller H. 2006; Characterization of two novel polyomaviruses of birds by using multiply primed rolling-circle amplification of their genomes. J Virol 80:3523–3531 [View Article][PubMed]
    [Google Scholar]
  21. Johne R., Buck C. B., Allander T., Atwood W. J., Garcea R. L., Imperiale M. J., Major E. O., Ramqvist T., Norkin L. C. 2011; Taxonomical developments in the family Polyomaviridae. Arch Virol 156:1627–1634 [View Article][PubMed]
    [Google Scholar]
  22. Kane O. J., Smith J. R., Boersma P. D., Parsons N. J., Strauss V., Garcia-Borboroglu P., Villanueva C. 2010; Feather-loss disorder in African and Magellanic penguins. Waterbirds 33:415–421 [View Article]
    [Google Scholar]
  23. Kane O. J., Uhart M. M., Rago V., Pereda A. J., Smith J. R., Van Buren A., Clark J. A., Boersma P. D. 2012; Avian pox in Magellanic Penguins (Spheniscus magellanicus). J Wildl Dis 48:790–794 [View Article][PubMed]
    [Google Scholar]
  24. Kerry K. R., Riddle M. L. 2009 Health of Antarctic Wildlife. A Challenge for Science and Policy Heidelberg: Springer;
    [Google Scholar]
  25. Kincaid A. L., Bunton T. E., Cranfield M. 1988; Herpesvirus-like infection in black-footed penguins (Spheniscus demersus). J Wildl Dis 24:173–175 [View Article][PubMed]
    [Google Scholar]
  26. Krautwald M. E., Müller H., Kaleta E. F. 1989; Polyomavirus infection in budgerigars (Melopsittacus undulatus): clinical and aetiological studies. Zentralbl Veterinarmed B 36:459–467[PubMed]
    [Google Scholar]
  27. Langmead B., Salzberg S. L. 2012; Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357–359 [View Article][PubMed]
    [Google Scholar]
  28. Lee S. Y., Kim J. H., Park Y. M., Shin O. S., Kim H., Choi H. G., Song J. W. 2014; A novel adenovirus in Chinstrap penguins (Pygoscelis antarctica) in Antarctica. Viruses 6:2052–2061 [View Article][PubMed]
    [Google Scholar]
  29. López-Bueno A., Tamames J., Velázquez D., Moya A., Quesada A., Alcamí A. 2009; High diversity of the viral community from an Antarctic lake. Science 326:858–861 [View Article][PubMed]
    [Google Scholar]
  30. Lyver P. O., Barron M., Barton K. J., Ainley D. G., Pollard A., Gordon S., McNeill S., Ballard G., Wilson P. R. 2014; Trends in the breeding population of Adélie penguins in the Ross Sea, 1981–2012: a coincidence of climate and resource extraction effects. PLoS ONE 9:e91188 [View Article][PubMed]
    [Google Scholar]
  31. Meiring T. L., Tuffin I. M., Cary C., Cowan D. A. 2012; Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2. Extremophiles 16:715–726 [View Article][PubMed]
    [Google Scholar]
  32. Miller P. J., Afonso C. L., Spackman E., Scott M. A., Pedersen J. C., Senne D. A., Brown J. D., Fuller C. M., Uhart M. M.other authors 2010; Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands. J Virol 84:11496–11504 [View Article][PubMed]
    [Google Scholar]
  33. Mizutani T., Sayama Y., Nakanishi A., Ochiai H., Sakai K., Wakabayashi K., Tanaka N., Miura E., Oba M.other authors 2011; Novel DNA virus isolated from samples showing endothelial cell necrosis in the Japanese eel, Anguilla japonica. Virology 412:179–187 [View Article][PubMed]
    [Google Scholar]
  34. Morgan I. R., Westbury H. A. 1981; Virological studies of Adelie Penguins (Pygoscelis adeliae) in Antarctica. Avian Dis 25:1019–1026 [View Article][PubMed]
    [Google Scholar]
  35. Morgan I. R., Westbury H. A. 1988; Studies of viruses in penguins in the Vestfold Hills. Hydrobiologia 165:263–269 [View Article]
    [Google Scholar]
  36. Morgan I. R., Westbury H. A., Caple I. W., Campbell J. 1981; A survey of virus infection in sub-antarctic penguins on Macquarie Island, Southern Ocean. Aust Vet J 57:333–335 [View Article][PubMed]
    [Google Scholar]
  37. Morgan I. R., Westbury H. A., Campbell J. 1985; Viral infections of little blue penguins (Eudyptula minor) along the southern coast of Australia. J Wildl Dis 21:193–198 [View Article][PubMed]
    [Google Scholar]
  38. Muhire B. M., Varsani A., Martin D. P. 2014; sdt: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS ONE 9:e108277 [View Article][PubMed]
    [Google Scholar]
  39. Müller H., Nitschke R. 1986; A polyoma-like virus associated with an acute disease of fledgling budgerigars (Melopsittacus undulatus). Med Microbiol Immunol (Berl) 175:1–13 [View Article][PubMed]
    [Google Scholar]
  40. Park Y. M., Kim J. H., Gu S. H., Lee S. Y., Lee M. G., Kang Y. K., Kang S. H., Kim H. J., Song J. W. 2012; Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica. Virology 422:144–150 [View Article][PubMed]
    [Google Scholar]
  41. Simpson J. T., Wong K., Jackman S. D., Schein J. E., Jones S. J., Birol I. 2009; ABySS: a parallel assembler for short read sequence data. Genome Res 19:1117–1123 [View Article][PubMed]
    [Google Scholar]
  42. Smith K. M., Karesh W. B., Majluf P., Paredes R., Zavalaga C., Reul A. H., Stetter M., Braselton W. E., Puche H., Cook R. A. 2008; Health evaluation of free-ranging Humboldt penguins (Spheniscus humboldti) in Peru. Avian Dis 52:130–135 [View Article][PubMed]
    [Google Scholar]
  43. Swanson M. M., Reavy B., Makarova K. S., Cock P. J., Hopkins D. W., Torrance L., Koonin E. V., Taliansky M. 2012; Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS ONE 7:e40683 [View Article][PubMed]
    [Google Scholar]
  44. Thomazelli L. M., Araujo J., Oliveira D. B., Sanfilippo L., Ferreira C. S., Brentano L., Pelizari V. H., Nakayama C., Duarte R.other authors 2010; Newcastle disease virus in penguins from King George Island on the Antarctic region. Vet Microbiol 146:155–160 [View Article][PubMed]
    [Google Scholar]
  45. Tuttle A. D., Andreadis T. G., Frasca S. Jr, Dunn J. L. 2005; Eastern equine encephalitis in a flock of African penguins maintained at an aquarium. J Am Vet Med Assoc 226:2059–2062, 2003 [View Article][PubMed]
    [Google Scholar]
  46. Varsani A., Kraberger S., Jennings S., Porzig E. L., Julian L., Massaro M., Pollard A., Ballard G., Ainley D. G. 2014; A novel papillomavirus in Adélie penguin (Pygoscelis adeliae) faeces sampled at the Cape Crozier colony, Antarctica. J Gen Virol 95:1352–1365 [View Article][PubMed]
    [Google Scholar]
  47. Wittig W., Hoffmann K., Müller H., Johne R. 2007; [Detection of DNA of the finch polyomavirus in diseases of various types of birds in the order Passeriformes]. Berl Munch Tierarztl Wochenschr 120:113–119 (in German) [PubMed]
    [Google Scholar]
  48. Woolford L., Rector A., Van Ranst M., Ducki A., Bennett M. D., Nicholls P. K., Warren K. S., Swan R. A., Wilcox G. E., O’Hara A. J. 2007; A novel virus detected in papillomas and carcinomas of the endangered western barred bandicoot (Perameles bougainville) exhibits genomic features of both the Papillomaviridae and Polyomaviridae. J Virol 81:13280–13290 [View Article][PubMed]
    [Google Scholar]
  49. Zawar-Reza P., Argüello-Astorga G. R., Kraberger S., Julian L., Stainton D., Broady P. A., Varsani A. 2014; Diverse small circular single-stranded DNA viruses identified in a freshwater pond on the McMurdo Ice Shelf (Antarctica). Infect Genet Evol 26:132–138 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/vir.0.000038
Loading
/content/journal/jgv/10.1099/vir.0.000038
Loading

Data & Media loading...

Supplements

Supplementary Data

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error